Variant report

Variant	rs73027004
Chromosome Location	chr1:165547651-165547652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10465551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494444	1.00[ASN][1000 genomes]
rs1590578	0.86[ASN][1000 genomes]
rs16846009	0.86[ASN][1000 genomes]
rs16846680	0.95[ASN][1000 genomes]
rs2013490	0.88[ASN][1000 genomes]
rs206236	0.88[ASN][1000 genomes]
rs2252583	1.00[ASN][1000 genomes]
rs2485405	0.85[AFR][1000 genomes]
rs28446600	0.80[ASN][1000 genomes]
rs411083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60128426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72693830	0.88[ASN][1000 genomes]
rs73027007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73027009	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73027011	0.88[AFR][1000 genomes]
rs73027013	0.88[AFR][1000 genomes]
rs74118817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165549800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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