Variant report
| Variant | rs16846009 |
|---|---|
| Chromosome Location | chr1:165480362-165480363 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10465551 | 0.86[ASN][1000 genomes] |
| rs10494444 | 0.86[ASN][1000 genomes] |
| rs1590578 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16846680 | 0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1981167 | 1.00[EUR][1000 genomes] |
| rs2013490 | 0.84[ASN][1000 genomes] |
| rs206236 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2252583 | 0.86[ASN][1000 genomes] |
| rs285411 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs411083 | 0.86[ASN][1000 genomes] |
| rs4290038 | 1.00[EUR][1000 genomes] |
| rs447374 | 0.86[ASN][1000 genomes] |
| rs60128426 | 0.86[ASN][1000 genomes] |
| rs72693830 | 0.84[ASN][1000 genomes] |
| rs73027004 | 0.86[ASN][1000 genomes] |
| rs73027007 | 0.86[ASN][1000 genomes] |
| rs73027009 | 0.86[ASN][1000 genomes] |
| rs74118817 | 0.86[ASN][1000 genomes] |
| rs9333367 | 1.00[EUR][1000 genomes] |
| rs9333376 | 1.00[EUR][1000 genomes] |
| rs9333391 | 1.00[EUR][1000 genomes] |
| rs9333393 | 1.00[EUR][1000 genomes] |
| rs9333394 | 1.00[EUR][1000 genomes] |
| rs9333397 | 1.00[EUR][1000 genomes] |
| rs9333405 | 1.00[EUR][1000 genomes] |
| rs9333414 | 1.00[EUR][1000 genomes] |
| rs9333417 | 1.00[EUR][1000 genomes] |
| rs9333418 | 1.00[EUR][1000 genomes] |
| rs9333419 | 1.00[EUR][1000 genomes] |
| rs9333421 | 1.00[EUR][1000 genomes] |
| rs9333424 | 1.00[EUR][1000 genomes] |
| rs9333425 | 1.00[EUR][1000 genomes] |
| rs9333426 | 1.00[EUR][1000 genomes] |
| rs9333427 | 1.00[EUR][1000 genomes] |
| rs9333428 | 1.00[EUR][1000 genomes] |
| rs9333429 | 1.00[EUR][1000 genomes] |
| rs9333430 | 1.00[EUR][1000 genomes] |
| rs9333431 | 1.00[EUR][1000 genomes] |
| rs9333434 | 1.00[EUR][1000 genomes] |
| rs9333435 | 1.00[EUR][1000 genomes] |
| rs9333437 | 1.00[EUR][1000 genomes] |
| rs9333472 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165467600-165483200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr1:165479600-165481000 | Enhancers | Fetal Heart | heart |
