Variant report

Variant	rs9333472
Chromosome Location	chr1:165619914-165619915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165599477..165601110-chr1:165618354..165620160,2	K562	blood:
2	chr1:165613866..165617736-chr1:165618258..165621387,4	K562	blood:
3	chr1:165597575..165602245-chr1:165617678..165620274,4	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10800161	1.00[EUR][1000 genomes]
rs12566281	1.00[EUR][1000 genomes]
rs1590578	1.00[EUR][1000 genomes]
rs16846009	1.00[EUR][1000 genomes]
rs16846680	1.00[EUR][1000 genomes]
rs1981167	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290038	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701006	1.00[JPT][hapmap]
rs72696036	1.00[AFR][1000 genomes]
rs7527279	1.00[JPT][hapmap]
rs9333367	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9333376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9333389	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9333391	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333393	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333394	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333405	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333418	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333419	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333421	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333426	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333428	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333431	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333434	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:165602200-165624200	Weak transcription	Dnd41	blood
3	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
5	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:165604600-165620000	Weak transcription	Fetal Brain Female	brain
7	chr1:165604800-165623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:165605000-165620200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:165605200-165620000	Weak transcription	Primary T cells from cord blood	blood
12	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:165605400-165620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:165605600-165622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:165606800-165622800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:165607200-165620000	Weak transcription	Fetal Brain Male	brain
18	chr1:165607200-165623000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:165607400-165620000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:165607400-165620200	Weak transcription	NHLF	lung
21	chr1:165609800-165620000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
23	chr1:165611400-165622400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:165612000-165622200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:165613800-165621800	Weak transcription	Brain Angular Gyrus	brain
26	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:165615400-165622800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
29	chr1:165615600-165620200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:165615600-165622000	Weak transcription	HMEC	breast
31	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
32	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:165615600-165631000	Weak transcription	NHEK	skin
34	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:165616200-165620400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:165616400-165620200	Weak transcription	Pancreas	Pancrea
37	chr1:165616400-165620200	Weak transcription	K562	blood
38	chr1:165616400-165621200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:165616400-165622000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:165616400-165622800	Weak transcription	Spleen	Spleen
41	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr1:165616800-165623000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
45	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
46	chr1:165617200-165620200	Weak transcription	HepG2	liver
47	chr1:165617400-165620000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr1:165617400-165620000	Weak transcription	Brain Substantia Nigra	brain
49	chr1:165617400-165620200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:165617400-165625800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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