Variant report

Variant	rs9333405
Chromosome Location	chr1:165606205-165606206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:165599420..165602481-chr1:165605266..165607177,3	MCF-7	breast:
2	chr1:165600467..165604202-chr1:165606013..165610039,4	K562	blood:
3	chr1:165595783..165597532-chr1:165605260..165606907,2	K562	blood:
4	chr1:165595783..165598843-chr1:165605260..165607101,3	K562	blood:
5	chr1:165606197..165607877-chr1:165611053..165612573,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC52-3	chr1:165606012-165606386	NONHSAT007324

No data

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1590578	1.00[EUR][1000 genomes]
rs16846009	1.00[EUR][1000 genomes]
rs16846680	1.00[EUR][1000 genomes]
rs1981167	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6701006	1.00[JPT][hapmap]
rs72696036	1.00[AFR][1000 genomes]
rs7527279	1.00[JPT][hapmap]
rs9333367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9333376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9333389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9333391	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333421	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333426	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333429	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333434	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333453	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9333472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165601600-165608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165601600-165615200	Weak transcription	Spleen	Spleen
3	chr1:165601800-165607400	Enhancers	Brain Substantia Nigra	brain
4	chr1:165601800-165615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:165602200-165624200	Weak transcription	Dnd41	blood
7	chr1:165602400-165606800	Enhancers	Brain Angular Gyrus	brain
8	chr1:165602400-165614400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:165602400-165614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:165602400-165615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:165602600-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:165602600-165606600	Weak transcription	HepG2	liver
13	chr1:165602600-165610400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:165602600-165615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:165603000-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:165603000-165607000	Weak transcription	Aorta	Aorta
17	chr1:165603000-165614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
19	chr1:165603200-165607200	Enhancers	Brain Cingulate Gyrus	brain
20	chr1:165603200-165608000	Enhancers	Liver	Liver
21	chr1:165603400-165606600	Weak transcription	HUVEC	blood vessel
22	chr1:165603600-165606400	Weak transcription	Pancreas	Pancrea
23	chr1:165603600-165606600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr1:165603600-165607000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:165603600-165607000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:165603600-165607400	Weak transcription	Lung	lung
27	chr1:165603600-165608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:165603600-165608400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:165603600-165608400	Weak transcription	NHEK	skin
30	chr1:165603600-165611400	Weak transcription	Esophagus	oesophagus
31	chr1:165603600-165614600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:165603600-165614800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:165603600-165614800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:165603600-165617400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
36	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
37	chr1:165604000-165606400	Genic enhancers	Duodenum Mucosa	Duodenum
38	chr1:165604000-165607200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:165604000-165608200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:165604000-165614400	Weak transcription	K562	blood
41	chr1:165604000-165616000	Weak transcription	Gastric	stomach
42	chr1:165604200-165610400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:165604400-165606600	Weak transcription	Fetal Intestine Large	intestine
44	chr1:165604400-165607400	Genic enhancers	Placenta	Placenta
45	chr1:165604400-165610000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr1:165604400-165614800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:165604600-165606400	Strong transcription	HMEC	breast
49	chr1:165604600-165606600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:165604600-165606600	Genic enhancers	NHLF	lung

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