Variant report

Variant	rs73037333
Chromosome Location	chr19:38782017-38782018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr19:38781392-38782058	MCF-7	breast:	n/a	chr19:38781408-38781417 chr19:38781405-38781414
2	POLR2A	chr19:38781966-38782100	MCF-7	breast:	n/a	n/a
3	MAX	chr19:38781125-38782020	MCF-7	breast:	n/a	n/a
4	SIN3AK20	chr19:38781161-38782049	MCF-7	breast:	n/a	n/a
5	POLR2A	chr19:38781046-38782119	MCF-7	breast:	n/a	n/a
6	SIN3AK20	chr19:38781069-38782051	MCF-7	breast:	n/a	n/a
7	RCOR1	chr19:38780794-38782058	IMR90	lung:	n/a	n/a
8	NFIC	chr19:38781211-38782048	ECC-1	luminal epithelium:	n/a	chr19:38781324-38781340 chr19:38781324-38781341
9	MAZ	chr19:38780579-38782172	IMR90	lung:	n/a	n/a
10	TCF12	chr19:38781202-38782029	ECC-1	luminal epithelium:	n/a	n/a
11	NR2F2	chr19:38781269-38782041	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:38779327..38783351-chr19:38794485..38798006,3	K562	blood:
2	chr19:38780526..38782372-chr19:38797679..38799619,2	K562	blood:
3	chr19:38781402..38783331-chr19:38864462..38866697,2	MCF-7	breast:
4	chr19:38753341..38760825-chr19:38779856..38783291,10	MCF-7	breast:
5	chr11:65406543..65408772-chr19:38780595..38783579,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C19orf33-1	chr19:38781177-38783108	NONHSAT066197

No data

Variant related genes	Relation type
ENSG00000200209	TF binding region
ENSG00000167642	Chromatin interaction
ENSG00000167644	Chromatin interaction
ENSG00000099341	Chromatin interaction
ENSG00000167645	Chromatin interaction
ENSG00000213445	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3885340	0.97[EUR][1000 genomes]
rs61734615	0.97[EUR][1000 genomes]
rs73037321	0.97[EUR][1000 genomes]
rs73037343	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73037346	0.97[EUR][1000 genomes]
rs73041292	0.97[EUR][1000 genomes]
rs73043012	0.84[EUR][1000 genomes]
rs73043013	0.84[EUR][1000 genomes]
rs73043014	0.84[EUR][1000 genomes]
rs73043015	0.84[EUR][1000 genomes]
rs73043019	0.84[EUR][1000 genomes]
rs73043021	0.84[EUR][1000 genomes]
rs73043022	0.84[EUR][1000 genomes]
rs73043027	0.84[EUR][1000 genomes]
rs73043028	0.84[EUR][1000 genomes]
rs73043029	0.81[EUR][1000 genomes]
rs73043030	0.81[EUR][1000 genomes]
rs73043033	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38759600-38783200	Weak transcription	Fetal Brain Male	brain
2	chr19:38765800-38794800	Weak transcription	Small Intestine	intestine
3	chr19:38769200-38791200	Weak transcription	Fetal Kidney	kidney
4	chr19:38769400-38795200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr19:38770800-38785800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:38771400-38805800	Weak transcription	Right Atrium	heart
7	chr19:38772600-38782800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr19:38772800-38784200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr19:38773000-38785400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr19:38773000-38787800	Strong transcription	Fetal Intestine Small	intestine
11	chr19:38773200-38785600	Strong transcription	Fetal Intestine Large	intestine
12	chr19:38773800-38784000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:38774000-38783200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr19:38774000-38785000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr19:38774000-38785600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr19:38774800-38784000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr19:38775000-38784200	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr19:38775800-38791000	Weak transcription	Liver	Liver
19	chr19:38776000-38784000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr19:38776000-38784200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:38777000-38791200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:38778000-38785400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr19:38778000-38785400	Genic enhancers	Placenta	Placenta
24	chr19:38778200-38782200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:38778200-38782800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:38778200-38783600	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr19:38778200-38784200	Genic enhancers	Esophagus	oesophagus
28	chr19:38778200-38785800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr19:38778400-38783000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr19:38778400-38783000	Strong transcription	Primary hematopoietic stem cells	blood
31	chr19:38778400-38783000	Strong transcription	Fetal Brain Female	brain
32	chr19:38778400-38784000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr19:38778400-38784200	Enhancers	HSMMtube	muscle
34	chr19:38778400-38785200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:38778400-38786000	Strong transcription	Aorta	Aorta
36	chr19:38778600-38782600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr19:38778600-38782600	Strong transcription	Thymus	Thymus
38	chr19:38778600-38782800	Weak transcription	Fetal Heart	heart
39	chr19:38778600-38782800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr19:38778600-38786400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:38778800-38785400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr19:38778800-38785800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr19:38778800-38785800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr19:38779000-38782400	Strong transcription	Fetal Thymus	thymus
45	chr19:38779000-38782800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:38779000-38782800	Genic enhancers	Gastric	stomach
47	chr19:38779000-38784200	Enhancers	HSMM	muscle
48	chr19:38779200-38784000	Strong transcription	Primary B cells from cord blood	blood
49	chr19:38779200-38784800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr19:38779400-38782200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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