Variant report

Variant	rs73043033
Chromosome Location	chr19:38850448-38850449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38843850..38848913-chr19:38849820..38852865,6	K562	blood:
2	chr19:38850348..38855103-chr19:38862504..38867180,11	K562	blood:
3	chr19:38849999..38854779-chr19:38863669..38868606,10	K562	blood:
4	chr19:38849976..38851523-chr19:38865521..38867449,2	MCF-7	breast:
5	chr19:38846299..38848988-chr19:38850348..38854198,4	MCF-7	breast:
6	chr19:38845897..38848818-chr19:38850039..38852720,3	K562	blood:

Variant related genes	Relation type
ENSG00000099338	Chromatin interaction
ENSG00000099341	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11083454	0.93[EUR][1000 genomes]
rs11538289	0.93[EUR][1000 genomes]
rs2302228	0.93[EUR][1000 genomes]
rs3745955	0.80[EUR][1000 genomes]
rs3745963	0.93[EUR][1000 genomes]
rs3760884	0.93[EUR][1000 genomes]
rs3885340	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57753437	0.87[EUR][1000 genomes]
rs59491640	0.93[EUR][1000 genomes]
rs60780508	0.87[EUR][1000 genomes]
rs61734615	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6508791	0.87[EUR][1000 genomes]
rs6508792	0.93[EUR][1000 genomes]
rs6508793	0.93[EUR][1000 genomes]
rs7245668	0.93[EUR][1000 genomes]
rs7246085	0.93[EUR][1000 genomes]
rs7246191	0.93[EUR][1000 genomes]
rs7246213	0.93[EUR][1000 genomes]
rs7248540	0.93[EUR][1000 genomes]
rs7248780	0.93[EUR][1000 genomes]
rs7257976	0.93[EUR][1000 genomes]
rs73037321	0.84[EUR][1000 genomes]
rs73037333	0.81[EUR][1000 genomes]
rs73037343	0.84[EUR][1000 genomes]
rs73037346	0.84[EUR][1000 genomes]
rs73041292	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043012	0.84[EUR][1000 genomes]
rs73043013	0.84[EUR][1000 genomes]
rs73043014	0.84[EUR][1000 genomes]
rs73043015	0.84[EUR][1000 genomes]
rs73043019	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043021	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043022	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043027	0.84[EUR][1000 genomes]
rs73043028	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043029	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73043030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043098	0.97[EUR][1000 genomes]
rs73044905	0.93[EUR][1000 genomes]
rs73044908	0.93[EUR][1000 genomes]
rs73044911	0.93[EUR][1000 genomes]
rs73044915	0.93[EUR][1000 genomes]
rs73044917	0.93[EUR][1000 genomes]
rs73044919	0.93[EUR][1000 genomes]
rs73044923	0.80[EUR][1000 genomes]
rs73044926	0.93[EUR][1000 genomes]
rs73044928	0.93[EUR][1000 genomes]
rs73044930	0.93[EUR][1000 genomes]
rs73044932	0.93[EUR][1000 genomes]
rs73044937	0.93[EUR][1000 genomes]
rs73044942	0.93[EUR][1000 genomes]
rs73044944	0.93[EUR][1000 genomes]
rs73044946	0.93[EUR][1000 genomes]
rs73044947	0.93[EUR][1000 genomes]
rs73044948	0.93[EUR][1000 genomes]
rs73044953	0.93[EUR][1000 genomes]
rs8108440	0.93[EUR][1000 genomes]
rs8109713	0.93[EUR][1000 genomes]
rs8112499	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv911658	chr19:38785318-39002140	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38828200-38852000	Weak transcription	Right Atrium	heart
2	chr19:38835200-38852000	Weak transcription	Pancreas	Pancrea
3	chr19:38849400-38851800	Weak transcription	Lung	lung
4	chr19:38850400-38851800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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