Variant report

Variant	rs73043019
Chromosome Location	chr19:38834377-38834378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38833439..38835200-chr19:38870753..38873004,2	MCF-7	breast:
2	chr19:38753926..38756538-chr19:38833889..38836607,2	MCF-7	breast:
3	chr19:38827274..38829284-chr19:38833779..38835815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099341	Chromatin interaction
ENSG00000099338	Chromatin interaction
ENSG00000167642	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3885340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61734615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73037321	0.87[EUR][1000 genomes]
rs73037333	0.84[EUR][1000 genomes]
rs73037343	0.87[EUR][1000 genomes]
rs73037346	0.87[EUR][1000 genomes]
rs73041292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73043012	1.00[EUR][1000 genomes]
rs73043013	1.00[EUR][1000 genomes]
rs73043014	1.00[EUR][1000 genomes]
rs73043015	1.00[EUR][1000 genomes]
rs73043021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043022	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043027	1.00[EUR][1000 genomes]
rs73043028	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73043030	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043033	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043098	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv911658	chr19:38785318-39002140	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38828000-38834600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:38828000-38838400	Weak transcription	HSMMtube	muscle
3	chr19:38828200-38834600	Weak transcription	Gastric	stomach
4	chr19:38828200-38834800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:38828200-38836400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:38828200-38836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:38828200-38836800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr19:38828200-38837000	Weak transcription	Colon Smooth Muscle	Colon
9	chr19:38828200-38837400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:38828200-38838000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr19:38828200-38838200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr19:38828200-38838400	Weak transcription	Colonic Mucosa	Colon
13	chr19:38828200-38838400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr19:38828200-38839000	Weak transcription	Brain Anterior Caudate	brain
15	chr19:38828200-38840400	Weak transcription	Left Ventricle	heart
16	chr19:38828200-38841400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr19:38828200-38842000	Weak transcription	Brain Angular Gyrus	brain
18	chr19:38828200-38842600	Weak transcription	Esophagus	oesophagus
19	chr19:38828200-38844800	Weak transcription	Brain Substantia Nigra	brain
20	chr19:38828200-38852000	Weak transcription	Right Atrium	heart
21	chr19:38828400-38834600	Weak transcription	Fetal Muscle Leg	muscle
22	chr19:38828400-38834800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:38828400-38835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr19:38828400-38835400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr19:38828400-38836200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr19:38828400-38836800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:38828400-38837200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr19:38828400-38837800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr19:38828400-38838200	Weak transcription	Adipose Nuclei	Adipose
30	chr19:38828400-38839200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr19:38828400-38839600	Weak transcription	Primary T cells from cord blood	blood
32	chr19:38828400-38839800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr19:38828400-38839800	Weak transcription	Right Ventricle	heart
34	chr19:38828400-38840000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr19:38828600-38838800	Weak transcription	Primary B cells from cord blood	blood
36	chr19:38828600-38839000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr19:38828600-38839600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr19:38828800-38837000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr19:38829000-38838600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr19:38829400-38834600	Weak transcription	Dnd41	blood
41	chr19:38829400-38834800	Weak transcription	Pancreas	Pancrea
42	chr19:38829400-38835000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr19:38829400-38836600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr19:38829400-38839800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr19:38829600-38839400	Weak transcription	Thymus	Thymus
46	chr19:38830200-38844800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr19:38830400-38837800	Weak transcription	Fetal Intestine Large	intestine
48	chr19:38831400-38835200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr19:38831600-38838200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr19:38832200-38834400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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