Variant report

Variant	rs73042369
Chromosome Location	chr2:190744688-190744689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:190743900-190744722	Hela-S3	cervix:	n/a	n/a
2	FOSL2	chr2:190743869-190744820	HepG2	liver:	n/a	n/a
3	POLR2A	chr2:190744176-190745089	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:190744299-190744797	GM12878	blood:	n/a	n/a
5	POLR2A	chr2:190743012-190744945	K562	blood:	n/a	n/a
6	POLR2A	chr2:190744423-190744771	PFSK-1	brain:	n/a	n/a
7	POLR2A	chr2:190744152-190744765	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
ENSG00000238641	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10178729	0.85[AMR][1000 genomes]
rs13399648	0.94[EUR][1000 genomes]
rs13401044	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13404927	0.87[ASN][1000 genomes]
rs41561515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55795880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5743067	0.85[AMR][1000 genomes]
rs5743118	0.82[AFR][1000 genomes]
rs5743130	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5743161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743164	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5743169	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743187	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58856396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59846629	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60386871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73042345	0.84[AFR][1000 genomes]
rs73042348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73042354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044242	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73044270	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73044272	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73044274	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs735558	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190701600-190744800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:190701800-190745200	Weak transcription	Fetal Kidney	kidney
3	chr2:190702400-190745600	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:190707600-190746000	Weak transcription	Left Ventricle	heart
5	chr2:190713200-190745600	Weak transcription	Pancreas	Pancrea
6	chr2:190713800-190744800	Weak transcription	K562	blood
7	chr2:190714800-190745200	Weak transcription	NHEK	skin
8	chr2:190715600-190744800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:190718600-190745800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:190722200-190745600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:190725200-190746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:190729000-190745200	Weak transcription	HUVEC	blood vessel
13	chr2:190729800-190745800	Weak transcription	Thymus	Thymus
14	chr2:190730800-190744800	Weak transcription	NHLF	lung
15	chr2:190731600-190745200	Weak transcription	NHDF-Ad	bronchial
16	chr2:190732000-190744800	Weak transcription	HepG2	liver
17	chr2:190732200-190744800	Weak transcription	A549	lung
18	chr2:190732800-190745800	Weak transcription	Fetal Lung	lung
19	chr2:190738600-190746000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:190738800-190745000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:190738800-190746000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:190739800-190745800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:190740400-190745200	Weak transcription	Primary T cells from cord blood	blood
24	chr2:190740400-190746000	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:190741000-190745000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:190741200-190745000	Weak transcription	Dnd41	blood
27	chr2:190742200-190745000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:190742200-190745200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:190742200-190745200	Weak transcription	Liver	Liver
30	chr2:190742400-190745200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:190742600-190745000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:190742600-190745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr2:190742600-190745800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr2:190742800-190745000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr2:190742800-190746200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:190743200-190744800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:190743200-190746400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr2:190743400-190745000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:190743800-190745200	Weak transcription	HSMM	muscle
40	chr2:190743800-190745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:190744000-190745600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr2:190744200-190746000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr2:190744400-190744800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr2:190744600-190744800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr2:190744600-190745000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:190744600-190745200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr2:190744600-190746200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:190744600-190746200	Weak transcription	Fetal Brain Female	brain
49	chr2:190744600-190758200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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