Variant report

Variant	rs73044270
Chromosome Location	chr2:190793738-190793739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190773590..190776514-chr2:190792522..190794734,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10178729	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13399648	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13401044	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13404927	0.86[ASN][1000 genomes]
rs41561515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55795880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5743067	0.85[AMR][1000 genomes]
rs5743130	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5743161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743169	1.00[AMR][1000 genomes]
rs5743175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5743189	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58856396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59846629	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60386871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042348	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73042354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73042369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73044242	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73044272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044274	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044280	0.84[AFR][1000 genomes]
rs735558	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875618	chr2:190789387-190883360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190792800-190797600	Weak transcription	HSMM	muscle
2	chr2:190792800-190797600	Weak transcription	NHDF-Ad	bronchial
3	chr2:190792800-190797800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:190793000-190794200	Weak transcription	A549	lung
5	chr2:190793000-190797400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:190793000-190797600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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