Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10466814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12304858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314833	1.00[AMR][1000 genomes]
rs2101263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069894	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73069900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071202	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73071616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073117	1.00[EUR][1000 genomes]
rs73073125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073197	1.00[EUR][1000 genomes]
rs73075104	1.00[EUR][1000 genomes]
rs73075111	1.00[EUR][1000 genomes]
rs73075116	1.00[EUR][1000 genomes]
rs73075118	1.00[EUR][1000 genomes]
rs73075125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv557975	chr12:30000388-30022105	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30008400-30014400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:30011200-30012000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:30011200-30012000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:30011400-30012000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:30011400-30012800	Enhancers	HMEC	breast

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