Variant report
| Variant | rs73069900 |
|---|---|
| Chromosome Location | chr12:30012104-30012105 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10466814 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11050507 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12310540 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12314833 | 1.00[AMR][1000 genomes] |
| rs2101263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73069881 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73069894 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73069898 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071178 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071181 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071202 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73071616 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73072819 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073108 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073117 | 1.00[EUR][1000 genomes] |
| rs73073125 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073197 | 1.00[EUR][1000 genomes] |
| rs73075104 | 1.00[EUR][1000 genomes] |
| rs73075111 | 1.00[EUR][1000 genomes] |
| rs73075116 | 1.00[EUR][1000 genomes] |
| rs73075118 | 1.00[EUR][1000 genomes] |
| rs73075125 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73079439 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529328 | chr12:29692414-30246209 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv469191 | chr12:29939628-30098770 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv557958 | chr12:29939628-30098770 | ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv526146 | chr12:29989292-30112823 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv557975 | chr12:30000388-30022105 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30008400-30014400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr12:30011400-30012800 | Enhancers | HMEC | breast |
