Variant report

Variant	rs73069952
Chromosome Location	chr3:46582367-46582368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs13061783	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13062049	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13069424	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13070959	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076697	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13077283	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13083022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093282	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13099992	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13353428	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17078930	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17286758	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28539486	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28595844	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28617572	0.95[EUR][1000 genomes]
rs28670418	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28687398	0.94[EUR][1000 genomes]
rs34167705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34227041	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34668230	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34767161	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34850133	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35056755	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35082490	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35124447	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35740565	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35760835	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35864396	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3934895	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55689943	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55702201	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56106816	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56288081	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442001	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442003	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442004	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66627456	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66702674	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67091203	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67222447	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67305272	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67647205	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6769817	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770574	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6772291	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6778305	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6778415	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6778422	0.95[ASN][1000 genomes]
rs6783443	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792420	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67962987	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6801427	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804179	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71622507	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73067779	0.92[EUR][1000 genomes]
rs73069915	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7624932	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7625793	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626061	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7628435	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7648827	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9808967	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846026	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865911	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9866206	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867359	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871405	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
4	chr3:46558400-46591000	Weak transcription	Gastric	stomach
5	chr3:46567200-46586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46569000-46584200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:46571000-46583800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:46571600-46587000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
10	chr3:46578800-46586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:46579000-46583000	Weak transcription	Ovary	ovary
12	chr3:46579200-46587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:46579600-46584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:46579800-46586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:46580200-46584400	Weak transcription	Placenta	Placenta
16	chr3:46580200-46586200	Weak transcription	Liver	Liver
17	chr3:46580600-46584400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:46580600-46584400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:46580600-46584400	Weak transcription	Left Ventricle	heart
20	chr3:46580600-46586200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:46580800-46582400	Enhancers	Duodenum Mucosa	Duodenum
22	chr3:46580800-46583600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:46580800-46586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:46581000-46583600	Weak transcription	NH-A	brain
25	chr3:46581000-46583800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:46581000-46583800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:46581000-46584400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:46581200-46582400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr3:46581200-46582400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:46581200-46582600	Enhancers	Primary hematopoietic stem cells	blood
31	chr3:46581200-46583600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:46581200-46584000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:46581200-46584400	Enhancers	Primary B cells from peripheral blood	blood
34	chr3:46581200-46584400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr3:46581200-46584800	Enhancers	Thymus	Thymus
36	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
37	chr3:46581400-46582400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr3:46581400-46582600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:46581400-46583600	Weak transcription	HUVEC	blood vessel
40	chr3:46581400-46583800	Weak transcription	Osteobl	bone
41	chr3:46581400-46584200	Enhancers	Primary B cells from cord blood	blood
42	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
43	chr3:46581600-46582400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr3:46581600-46582400	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr3:46581600-46582400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:46581600-46582600	Weak transcription	Colonic Mucosa	Colon
47	chr3:46581600-46582600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr3:46581600-46582800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:46581600-46583000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:46581600-46583000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links