Variant report
| Variant | rs73073983 |
|---|---|
| Chromosome Location | chr12:30474495-30474496 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TSPAN11-4 | chr12:30474054-30474550 | ENSG00000257932 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12302529 | 1.00[EUR][1000 genomes] |
| rs12307087 | 1.00[EUR][1000 genomes] |
| rs58374057 | 1.00[EUR][1000 genomes] |
| rs73073973 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73073998 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075843 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075845 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075846 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075848 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075849 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075850 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73075854 | 1.00[EUR][1000 genomes] |
| rs73077754 | 1.00[EUR][1000 genomes] |
| rs73079866 | 1.00[EUR][1000 genomes] |
| rs73079882 | 1.00[EUR][1000 genomes] |
| rs73081831 | 1.00[EUR][1000 genomes] |
| rs73088524 | 1.00[EUR][1000 genomes] |
| rs73088540 | 1.00[EUR][1000 genomes] |
| rs73090544 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832360 | chr12:30393329-30555693 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv517916 | chr12:30454845-30485611 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3343291 | chr12:30455597-30992837 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 4 | esv33180 | chr12:30471617-30478229 | Weak transcription | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30471400-30476000 | Weak transcription | Gastric | stomach |
