Variant report

Variant	rs73080219
Chromosome Location	chr5:35649766-35649767
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34852821	1.00[AFR][1000 genomes]
rs58946348	1.00[AFR][1000 genomes]
rs59953529	1.00[AFR][1000 genomes]
rs60514226	1.00[AFR][1000 genomes]
rs60935063	1.00[AFR][1000 genomes]
rs61309270	1.00[AFR][1000 genomes]
rs73078271	1.00[AFR][1000 genomes]
rs73078274	1.00[AFR][1000 genomes]
rs73078295	1.00[AFR][1000 genomes]
rs73080251	1.00[AFR][1000 genomes]
rs73080257	1.00[AFR][1000 genomes]
rs73080290	1.00[AFR][1000 genomes]
rs73080294	1.00[AFR][1000 genomes]
rs73084356	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35653800	Weak transcription	Lung	lung
2	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
3	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
7	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:35625600-35650000	Weak transcription	Right Ventricle	heart
10	chr5:35627200-35656600	Weak transcription	Osteobl	bone
11	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
12	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
14	chr5:35632600-35652400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:35634800-35651200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35634800-35651200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
20	chr5:35635000-35652000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:35635400-35651000	Weak transcription	Dnd41	blood
22	chr5:35635600-35651200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
25	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:35636000-35649800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:35638600-35651600	Weak transcription	Primary T cells from cord blood	blood
28	chr5:35639000-35655600	Weak transcription	Adipose Nuclei	Adipose
29	chr5:35639400-35664600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:35640600-35664000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:35644000-35654400	Weak transcription	Fetal Intestine Large	intestine
33	chr5:35645000-35650400	Weak transcription	Ovary	ovary
34	chr5:35645200-35662200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:35645200-35663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
37	chr5:35648200-35663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links