Variant report

Variant	rs73080251
Chromosome Location	chr5:35664213-35664214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34852821	1.00[AFR][1000 genomes]
rs58946348	1.00[AFR][1000 genomes]
rs59953529	1.00[AFR][1000 genomes]
rs60514226	1.00[AFR][1000 genomes]
rs60935063	1.00[AFR][1000 genomes]
rs61309270	1.00[AFR][1000 genomes]
rs73078271	1.00[AFR][1000 genomes]
rs73078274	1.00[AFR][1000 genomes]
rs73078295	1.00[AFR][1000 genomes]
rs73080219	1.00[AFR][1000 genomes]
rs73080257	1.00[AFR][1000 genomes]
rs73080290	1.00[AFR][1000 genomes]
rs73080294	1.00[AFR][1000 genomes]
rs73084356	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
2	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
3	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:35639400-35664600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
8	chr5:35651200-35673000	Weak transcription	Ovary	ovary
9	chr5:35651600-35664600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:35652000-35665000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr5:35656400-35670600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:35657400-35673000	Weak transcription	Fetal Heart	heart
13	chr5:35658800-35665000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:35660000-35664800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:35660200-35664600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:35661000-35665200	Weak transcription	Osteobl	bone
17	chr5:35661200-35666800	Weak transcription	Fetal Lung	lung
18	chr5:35663000-35669800	Weak transcription	Liver	Liver
19	chr5:35663400-35664800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:35663400-35664800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:35663800-35664800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:35664000-35665200	Weak transcription	Thymus	Thymus
23	chr5:35664000-35665400	Enhancers	Primary hematopoietic stem cells	blood
24	chr5:35664000-35665600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:35664200-35664600	Weak transcription	Dnd41	blood
26	chr5:35664200-35665400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr5:35664200-35665400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:35664200-35666400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links