Variant report

Variant	rs73080290
Chromosome Location	chr5:35677240-35677241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34852821	1.00[AFR][1000 genomes]
rs58946348	1.00[AFR][1000 genomes]
rs59953529	1.00[AFR][1000 genomes]
rs60514226	1.00[AFR][1000 genomes]
rs60935063	1.00[AFR][1000 genomes]
rs61309270	1.00[AFR][1000 genomes]
rs73078271	1.00[AFR][1000 genomes]
rs73078274	1.00[AFR][1000 genomes]
rs73078295	1.00[AFR][1000 genomes]
rs73080219	1.00[AFR][1000 genomes]
rs73080251	1.00[AFR][1000 genomes]
rs73080257	1.00[AFR][1000 genomes]
rs73080294	1.00[AFR][1000 genomes]
rs73084356	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
2	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
3	chr5:35665600-35677800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:35670400-35678800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:35672000-35708600	Weak transcription	Gastric	stomach
6	chr5:35673400-35678400	Weak transcription	Lung	lung
7	chr5:35673600-35693400	Weak transcription	Brain Anterior Caudate	brain
8	chr5:35673600-35694600	Weak transcription	Brain Angular Gyrus	brain
9	chr5:35673800-35677400	Weak transcription	Fetal Heart	heart
10	chr5:35673800-35679200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:35674200-35677600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:35674200-35678600	Weak transcription	Fetal Thymus	thymus
13	chr5:35674400-35679200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:35674800-35682800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:35675000-35679000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:35675000-35679200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:35675000-35679200	Weak transcription	Dnd41	blood
18	chr5:35675000-35679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:35675200-35679000	Weak transcription	Primary T cells from cord blood	blood
20	chr5:35675600-35679200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:35675600-35679400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:35675800-35679200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:35675800-35679400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:35676200-35679400	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:35677000-35679000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:35677200-35678000	Enhancers	Hela-S3	cervix

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