Variant report

Variant	rs73098836
Chromosome Location	chr12:44286253-44286254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10748373	1.00[ASN][1000 genomes]
rs12298970	1.00[ASN][1000 genomes]
rs12311962	1.00[ASN][1000 genomes]
rs12314126	1.00[ASN][1000 genomes]
rs1675760	0.88[AFR][1000 genomes]
rs1675766	0.88[ASN][1000 genomes]
rs1675771	1.00[ASN][1000 genomes]
rs1675774	0.94[ASN][1000 genomes]
rs1675776	0.94[ASN][1000 genomes]
rs1675778	1.00[ASN][1000 genomes]
rs1675782	1.00[ASN][1000 genomes]
rs1675783	1.00[ASN][1000 genomes]
rs1675784	1.00[ASN][1000 genomes]
rs1675786	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675788	1.00[ASN][1000 genomes]
rs1675791	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731422	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1731425	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1731438	1.00[ASN][1000 genomes]
rs1731439	0.94[ASN][1000 genomes]
rs1731440	1.00[ASN][1000 genomes]
rs1731442	1.00[ASN][1000 genomes]
rs1731449	0.88[ASN][1000 genomes]
rs1731453	0.88[ASN][1000 genomes]
rs2447114	1.00[ASN][1000 genomes]
rs2447115	1.00[ASN][1000 genomes]
rs2447116	0.94[ASN][1000 genomes]
rs2699992	0.88[ASN][1000 genomes]
rs2951436	1.00[ASN][1000 genomes]
rs4768049	1.00[ASN][1000 genomes]
rs7953229	0.88[ASN][1000 genomes]
rs7957146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7958314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7965635	0.88[ASN][1000 genomes]
rs7966024	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9739594	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899048	chr12:44209423-44307888	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44240400-44293000	Weak transcription	Aorta	Aorta
2	chr12:44278600-44287400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:44279200-44292600	Weak transcription	Left Ventricle	heart
4	chr12:44279200-44297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:44281800-44287600	Weak transcription	Psoas Muscle	Psoas
6	chr12:44282800-44289800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:44285400-44286400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:44285600-44287000	Enhancers	HSMMtube	muscle
9	chr12:44285800-44286400	Enhancers	Hela-S3	cervix
10	chr12:44286000-44286600	Enhancers	Colon Smooth Muscle	Colon
11	chr12:44286000-44286800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr12:44286000-44287000	Enhancers	Pancreas	Pancrea
13	chr12:44286000-44287400	Weak transcription	Osteobl	bone
14	chr12:44286000-44287600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr12:44286200-44286400	Enhancers	Stomach Smooth Muscle	stomach
16	chr12:44286200-44287600	Weak transcription	HMEC	breast
17	chr12:44286200-44289200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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