Variant report

Variant	rs7958314
Chromosome Location	chr12:44302430-44302431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10748373	0.94[ASN][1000 genomes]
rs11182294	0.81[EUR][1000 genomes]
rs11182326	0.83[EUR][1000 genomes]
rs11182328	0.83[EUR][1000 genomes]
rs11829881	0.83[EUR][1000 genomes]
rs12298970	0.94[ASN][1000 genomes]
rs12301015	0.83[EUR][1000 genomes]
rs12303804	0.83[EUR][1000 genomes]
rs12309681	0.83[EUR][1000 genomes]
rs12311962	0.94[ASN][1000 genomes]
rs12314126	0.94[ASN][1000 genomes]
rs1675766	0.82[ASN][1000 genomes]
rs1675771	0.94[ASN][1000 genomes]
rs1675774	0.89[ASN][1000 genomes]
rs1675776	0.88[ASN][1000 genomes]
rs1675778	0.94[ASN][1000 genomes]
rs1675782	0.94[ASN][1000 genomes]
rs1675783	0.94[ASN][1000 genomes]
rs1675784	0.94[ASN][1000 genomes]
rs1675786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1675788	0.94[ASN][1000 genomes]
rs1675791	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1731422	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1731438	0.94[ASN][1000 genomes]
rs1731439	0.89[ASN][1000 genomes]
rs1731440	0.94[ASN][1000 genomes]
rs1731442	0.94[ASN][1000 genomes]
rs1731449	0.82[ASN][1000 genomes]
rs1731453	0.82[ASN][1000 genomes]
rs2447114	0.94[ASN][1000 genomes]
rs2447115	0.94[ASN][1000 genomes]
rs2447116	0.89[ASN][1000 genomes]
rs2699992	0.82[ASN][1000 genomes]
rs2951436	0.94[ASN][1000 genomes]
rs4238092	0.83[EUR][1000 genomes]
rs4768049	0.94[ASN][1000 genomes]
rs73098836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7315408	0.87[EUR][1000 genomes]
rs7953229	0.82[ASN][1000 genomes]
rs7957146	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965635	0.82[ASN][1000 genomes]
rs7966024	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969641	0.83[EUR][1000 genomes]
rs9739594	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899048	chr12:44209423-44307888	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv526719	chr12:44298417-44315762	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44298800-44307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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