Variant report

Variant	rs73103054
Chromosome Location	chr1:217266175-217266176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12070441	1.00[AMR][1000 genomes]
rs73103072	1.00[AMR][1000 genomes]
rs73103075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103078	1.00[AMR][1000 genomes]
rs73103086	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104927	1.00[AMR][1000 genomes]
rs73104933	1.00[AMR][1000 genomes]
rs73104936	1.00[AMR][1000 genomes]
rs73107043	1.00[AMR][1000 genomes]
rs73107053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217264000-217271800	Weak transcription	Pancreas	Pancrea
2	chr1:217264200-217267200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:217264400-217266200	Enhancers	Fetal Intestine Large	intestine
4	chr1:217264400-217266200	Enhancers	Fetal Intestine Small	intestine
5	chr1:217264400-217269000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:217264400-217270800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:217264600-217266200	Enhancers	Fetal Heart	heart
8	chr1:217265000-217267800	Weak transcription	Fetal Brain Male	brain
9	chr1:217265000-217269800	Weak transcription	Psoas Muscle	Psoas
10	chr1:217265200-217269000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:217265200-217269600	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:217265600-217269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:217266000-217266200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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