Variant report

Variant	rs73103078
Chromosome Location	chr1:217279936-217279937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12070441	1.00[AMR][1000 genomes]
rs73103054	1.00[AMR][1000 genomes]
rs73103072	1.00[AMR][1000 genomes]
rs73103075	1.00[AMR][1000 genomes]
rs73103086	1.00[AMR][1000 genomes]
rs73103102	1.00[AMR][1000 genomes]
rs73104927	1.00[AMR][1000 genomes]
rs73104933	1.00[AMR][1000 genomes]
rs73104936	1.00[AMR][1000 genomes]
rs73107043	1.00[AMR][1000 genomes]
rs73107053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217279000-217280200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:217279000-217280400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:217279400-217280000	Weak transcription	Pancreas	Pancrea
4	chr1:217279600-217280000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:217279600-217280200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:217279800-217280200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:217279800-217280200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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