Variant report

Variant	rs73104933
Chromosome Location	chr1:217312066-217312067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:217311387-217313261	H1-neurons	neurons:	n/a	n/a
2	CTBP2	chr1:217311496-217312676	H1-hESC	embryonic stem cell:	n/a	n/a
3	SUZ12	chr1:217307066-217313271	NT2-D1	testis:	n/a	n/a
4	SUZ12	chr1:217309428-217313094	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr1:217311416-217312468	H1-neurons	neurons:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:217312060-217312110	SK-N-MC	brain:	n/a
2	chr1:217312060-217312110	LNCaP	prostate:	n/a
3	chr1:217312060-217312110	HCT-116	colon:	n/a
4	chr1:217312060-217312110	T-47D	breast:	n/a
5	chr1:217312060-217312110	Jurkat	blood:	n/a
6	chr1:217312060-217312110	NB4	blood:	n/a
7	chr1:217312060-217312110	NHDF-neo	bronchial:	n/a
8	chr1:217312060-217312110	U87	brain:	n/a
9	chr1:217312060-217312110	SK-N-SH_RA	brain:	n/a
10	chr1:217312060-217312110	GM12891	blood:	n/a
11	chr1:217312060-217312110	SK-N-SH	brain:	n/a
12	chr1:217312060-217312110	HCF	heart:	n/a
13	chr1:217312060-217312110	ovcar-3	ovarian:	n/a
14	chr1:217312060-217312110	GM12892	blood:	n/a
15	chr1:217312060-217312110	HMEC	breast:	n/a
16	chr1:217312060-217312110	HepG2	liver:	n/a
17	chr1:217312060-217312110	HRE	kidney:	n/a
18	chr1:217312060-217312110	GM12878	blood:	n/a
19	chr1:217312060-217312110	HPAEpiC	pulmonary alveolar:	n/a
20	chr1:217312060-217312110	CMK	blood:	n/a
21	chr1:217312060-217312110	NH-A	brain:	n/a
22	chr1:217312060-217312110	SKMC	muscle:	n/a
23	chr1:217312060-217312110	HRCEpiC	kidney:	n/a
24	chr1:217312060-217312110	HCM	heart:	n/a
25	chr1:217312060-217312110	HEEpiC	esophagus:	n/a
26	chr1:217312060-217312110	HNPCEpiC	eye:	n/a
27	chr1:217312060-217312110	NT2-D1	testis:	n/a
28	chr1:217312060-217312110	K562	blood:	n/a
29	chr1:217312060-217312110	RPTEC	kidney:	n/a
30	chr1:217312060-217312110	AoSMC	blood vessel:	n/a
31	chr1:217312060-217312110	HAEpiC	amniotic membrane:	n/a
32	chr1:217312060-217312110	MCF-7	breast:	n/a
33	chr1:217312060-217312110	ProgFib	skin:	n/a
34	chr1:217312060-217312110	AG10803	skin:	n/a
35	chr1:217312060-217312110	GM06990	blood:	n/a
36	chr1:217312060-217312110	AG09319	gingival:	n/a
37	chr1:217312060-217312110	AG04449	skin:	fetal
38	chr1:217312060-217312110	BJ	skin:	n/a
39	chr1:217312060-217312110	PANC-1	pancreas:	n/a
40	chr1:217312060-217312110	H1-hESC	embryonic stem cell:	embryo
41	chr1:217312060-217312110	AG09309	skin:	n/a
42	chr1:217312060-217312110	HEK293	kidney:	embryo
43	chr1:217312060-217312110	GM19239	blood:	n/a
44	chr1:217312060-217312110	HL-60	blood:	n/a
45	chr1:217312060-217312110	Hepatocyte	liver:	n/a
46	chr1:217312060-217312110	PFSK-1	brain:	n/a
47	chr1:217312060-217312110	A549	lung:	n/a
48	chr1:217312060-217312110	HRPEpiC	eye:	n/a
49	chr1:217312060-217312110	HCPEpiC	choroid plexus:	n/a
50	chr1:217312060-217312110	PrEC	prostate:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217308030..217310144-chr1:217311163..217313790,2	MCF-7	breast:
2	chr1:217311976..217314907-chr1:217319601..217322587,2	MCF-7	breast:

No data

Variant related genes	Relation type
ESRRG	TF binding region
ESRRG	CpG island

rs_ID	r²[population]
rs12070441	1.00[AMR][1000 genomes]
rs73103054	1.00[AMR][1000 genomes]
rs73103072	1.00[AMR][1000 genomes]
rs73103075	1.00[AMR][1000 genomes]
rs73103078	1.00[AMR][1000 genomes]
rs73103086	1.00[AMR][1000 genomes]
rs73103102	1.00[AMR][1000 genomes]
rs73104927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107043	1.00[AMR][1000 genomes]
rs73107053	1.00[AMR][1000 genomes]

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217307200-217314200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:217307200-217314200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:217307400-217314200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr1:217309800-217312600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:217309800-217313800	Bivalent Enhancer	Fetal Brain Male	brain
6	chr1:217310000-217313000	Weak transcription	Right Atrium	heart
7	chr1:217311000-217312200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:217311200-217312200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
9	chr1:217311200-217313000	Weak transcription	Right Ventricle	heart
10	chr1:217311400-217312800	Bivalent Enhancer	Liver	Liver
11	chr1:217311400-217313200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
12	chr1:217311600-217312200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
13	chr1:217311600-217312400	Bivalent Enhancer	Colonic Mucosa	Colon
14	chr1:217311800-217312200	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr1:217311800-217312200	Bivalent Enhancer	Fetal Thymus	thymus
16	chr1:217311800-217312400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:217311800-217312600	Weak transcription	Pancreas	Pancrea
18	chr1:217311800-217312800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
19	chr1:217311800-217312800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr1:217311800-217313000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:217311800-217313000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:217311800-217313200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr1:217312000-217312200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:217312000-217312200	Bivalent Enhancer	Brain Germinal Matrix	brain
25	chr1:217312000-217312200	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr1:217312000-217312200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
27	chr1:217312000-217312400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr1:217312000-217312400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr1:217312000-217312600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
30	chr1:217312000-217312600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr1:217312000-217312600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
32	chr1:217312000-217312600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:217312000-217312600	Bivalent/Poised TSS	NHEK	skin
34	chr1:217312000-217312800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:217312000-217312800	Enhancers	Brain Anterior Caudate	brain
36	chr1:217312000-217312800	Bivalent Enhancer	Fetal Kidney	kidney
37	chr1:217312000-217313000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:217312000-217313200	Bivalent Enhancer	Fetal Intestine Large	intestine
39	chr1:217312000-217313400	Bivalent Enhancer	Fetal Lung	lung
40	chr1:217312000-217313600	Bivalent Enhancer	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links