Variant report

Variant	rs73104759
Chromosome Location	chr20:24654930-24654931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24654225..24656073-chr20:24661737..24664471,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs6049848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215329	0.95[ASN][1000 genomes]
rs62215348	0.95[ASN][1000 genomes]
rs62215349	0.95[ASN][1000 genomes]
rs62215350	0.95[ASN][1000 genomes]
rs62215351	0.86[ASN][1000 genomes]
rs62215352	0.95[ASN][1000 genomes]
rs62215353	0.95[ASN][1000 genomes]
rs62215354	0.95[ASN][1000 genomes]
rs729541	0.95[ASN][1000 genomes]
rs73100738	0.90[ASN][1000 genomes]
rs73100740	0.95[ASN][1000 genomes]
rs73100749	0.95[ASN][1000 genomes]
rs73100765	0.95[ASN][1000 genomes]
rs73100766	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73100774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73102716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735185	0.95[ASN][1000 genomes]
rs73905423	0.95[ASN][1000 genomes]
rs8114266	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585744	chr20:24647725-24685440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24643400-24661400	Weak transcription	Right Atrium	heart
2	chr20:24645800-24657200	Weak transcription	Brain Anterior Caudate	brain
3	chr20:24646400-24657200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:24646600-24657400	Weak transcription	Brain Substantia Nigra	brain
5	chr20:24646800-24657200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:24646800-24657400	Weak transcription	Brain Angular Gyrus	brain
7	chr20:24649000-24657200	Weak transcription	Gastric	stomach
8	chr20:24649400-24655600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24650600-24655000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr20:24651800-24659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr20:24652200-24655000	Enhancers	NHLF	lung
12	chr20:24652800-24655000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:24653800-24658000	Weak transcription	Thymus	Thymus
14	chr20:24654000-24660600	Weak transcription	Fetal Thymus	thymus
15	chr20:24654400-24655000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr20:24654400-24655000	Enhancers	Osteobl	bone
17	chr20:24654400-24655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr20:24654400-24657200	Weak transcription	Brain Hippocampus Middle	brain
19	chr20:24654400-24658400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:24654600-24655400	Enhancers	A549	lung

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