Variant report
| Variant | rs73106708 |
|---|---|
| Chromosome Location | chr5:59604362-59604363 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:59604294-59604594 | HepG2 | liver: | n/a | chr5:59604331-59604343 chr5:59604375-59604383 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-806P | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16877888 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs16877890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16877893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16877895 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34114616 | 0.86[AFR][1000 genomes] |
| rs35250060 | 0.88[AFR][1000 genomes] |
| rs4460096 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57172565 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60693366 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61497235 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6874690 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6875020 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6891047 | 1.00[AMR][1000 genomes] |
| rs6892680 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73104776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73104780 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73104781 | 1.00[AMR][1000 genomes] |
| rs73106740 | 1.00[AMR][1000 genomes] |
| rs73106742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73106751 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73106753 | 1.00[AMR][1000 genomes] |
| rs73106756 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73106759 | 1.00[AMR][1000 genomes] |
| rs73106769 | 1.00[AMR][1000 genomes] |
| rs73106773 | 1.00[AMR][1000 genomes] |
| rs73106774 | 1.00[AMR][1000 genomes] |
| rs73106777 | 1.00[AMR][1000 genomes] |
| rs7712352 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7712697 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7718384 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025856 | chr5:59188419-59928852 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv830316 | chr5:59480269-59689829 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
