Variant report
| Variant | rs7310855 |
|---|---|
| Chromosome Location | chr12:87651678-87651679 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:87646760..87648711-chr12:87650692..87652796,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55838952 | 0.89[AFR][1000 genomes] |
| rs57047996 | 0.89[AFR][1000 genomes] |
| rs57950149 | 0.89[AFR][1000 genomes] |
| rs58062174 | 1.00[AFR][1000 genomes] |
| rs58506010 | 0.89[AFR][1000 genomes] |
| rs58729951 | 0.89[AFR][1000 genomes] |
| rs59692288 | 0.89[AFR][1000 genomes] |
| rs59948778 | 0.89[AFR][1000 genomes] |
| rs59978005 | 0.89[AFR][1000 genomes] |
| rs60036842 | 0.89[AFR][1000 genomes] |
| rs60512762 | 0.89[AFR][1000 genomes] |
| rs60675356 | 0.89[AFR][1000 genomes] |
| rs60920912 | 0.89[AFR][1000 genomes] |
| rs61081451 | 0.80[AFR][1000 genomes] |
| rs61132966 | 0.89[AFR][1000 genomes] |
| rs7307994 | 1.00[AFR][1000 genomes] |
| rs7313566 | 1.00[AFR][1000 genomes] |
| rs7316603 | 1.00[AFR][1000 genomes] |
| rs7980130 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054581 | chr12:87510821-87669648 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv427918 | chr12:87647585-87786660 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87649200-87653000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
