Variant report

Variant	rs73108906
Chromosome Location	chr12:41029037-41029038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58314047	1.00[EUR][1000 genomes]
rs73108951	1.00[EUR][1000 genomes]
rs73108955	1.00[EUR][1000 genomes]
rs73108972	1.00[EUR][1000 genomes]
rs73123173	1.00[EUR][1000 genomes]
rs7962024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv511504	chr12:41026938-41029204	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv512269	chr12:41027012-41029251	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2655104	chr12:41027138-41029070	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2035164	chr12:41027859-41029219	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3486052	chr12:41027904-41029142	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3486064	chr12:41027945-41029125	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3486030	chr12:41027974-41029054	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41027400-41029200	Enhancers	A549	lung
2	chr12:41028600-41029200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:41028600-41029200	Enhancers	Fetal Kidney	kidney
4	chr12:41028600-41029400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:41028600-41029400	Enhancers	Fetal Lung	lung
6	chr12:41029000-41029200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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