Variant report

Variant	rs73123173
Chromosome Location	chr12:41027832-41027833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17128169	1.00[AMR][1000 genomes]
rs17128339	1.00[AMR][1000 genomes]
rs17128774	1.00[AMR][1000 genomes]
rs58314047	1.00[EUR][1000 genomes]
rs61730701	1.00[AMR][1000 genomes]
rs73094608	1.00[AMR][1000 genomes]
rs73108906	1.00[EUR][1000 genomes]
rs73108951	1.00[EUR][1000 genomes]
rs73108955	1.00[EUR][1000 genomes]
rs73108972	1.00[EUR][1000 genomes]
rs73112034	1.00[AMR][1000 genomes]
rs73114293	1.00[AMR][1000 genomes]
rs73117528	1.00[AMR][1000 genomes]
rs73117565	1.00[AMR][1000 genomes]
rs7962024	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv511504	chr12:41026938-41029204	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv512269	chr12:41027012-41029251	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2655104	chr12:41027138-41029070	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41027400-41028600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:41027400-41028600	Weak transcription	Fetal Lung	lung
3	chr12:41027400-41029200	Enhancers	A549	lung
4	chr12:41027800-41028000	Enhancers	Aorta	Aorta
5	chr12:41027800-41028800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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