Variant report

Variant	rs73112034
Chromosome Location	chr12:40907308-40907309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11564105	1.00[AMR][1000 genomes]
rs11564112	1.00[AMR][1000 genomes]
rs11564174	1.00[AMR][1000 genomes]
rs11564254	1.00[AMR][1000 genomes]
rs11564257	1.00[AMR][1000 genomes]
rs11564261	1.00[AMR][1000 genomes]
rs17128169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17128339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3906865	1.00[AMR][1000 genomes]
rs61730701	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094608	1.00[AMR][1000 genomes]
rs73094944	1.00[AMR][1000 genomes]
rs73094986	1.00[AMR][1000 genomes]
rs73097494	1.00[AMR][1000 genomes]
rs73101527	1.00[AMR][1000 genomes]
rs73107134	1.00[AMR][1000 genomes]
rs73107137	1.00[AMR][1000 genomes]
rs73114293	1.00[AMR][1000 genomes]
rs73117528	1.00[AMR][1000 genomes]
rs73117565	1.00[AMR][1000 genomes]
rs73123173	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3519672	chr12:40898422-40907859	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3417437	chr12:40900070-40907460	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8970	chr12:40904094-40951213	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3351748	chr12:40905885-40909783	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40894800-40908600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:40905800-40908000	Weak transcription	GM12878-XiMat	blood
3	chr12:40906800-40908000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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