Variant report

Variant	rs73117565
Chromosome Location	chr12:40967204-40967205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564105	1.00[AMR][1000 genomes]
rs11564112	1.00[AMR][1000 genomes]
rs11564254	1.00[AMR][1000 genomes]
rs11564257	1.00[AMR][1000 genomes]
rs11564261	1.00[AMR][1000 genomes]
rs17128169	1.00[AMR][1000 genomes]
rs17128339	1.00[AMR][1000 genomes]
rs61730701	1.00[AMR][1000 genomes]
rs73094608	1.00[AMR][1000 genomes]
rs73094986	1.00[AMR][1000 genomes]
rs73101527	1.00[AMR][1000 genomes]
rs73112034	1.00[AMR][1000 genomes]
rs73114293	1.00[AMR][1000 genomes]
rs73117528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73123173	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv683	chr12:40951473-40996258	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40947400-40967800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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