Variant report
| Variant | rs61730701 |
|---|---|
| Chromosome Location | chr12:40930243-40930244 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CNTN1-1 | chr12:40930242-40930286 | XLOC_009713 |
| 2 | lnc-CNTN1-1 | chr12:40930242-40930286 | NONHSAT027736 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11564105 | 1.00[AMR][1000 genomes] |
| rs11564112 | 1.00[AMR][1000 genomes] |
| rs11564254 | 1.00[AMR][1000 genomes] |
| rs11564257 | 1.00[AMR][1000 genomes] |
| rs11564261 | 1.00[AMR][1000 genomes] |
| rs17128169 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17128339 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3906865 | 1.00[AMR][1000 genomes] |
| rs73094608 | 1.00[AMR][1000 genomes] |
| rs73094944 | 1.00[AMR][1000 genomes] |
| rs73094986 | 1.00[AMR][1000 genomes] |
| rs73101527 | 1.00[AMR][1000 genomes] |
| rs73107134 | 1.00[AMR][1000 genomes] |
| rs73107137 | 1.00[AMR][1000 genomes] |
| rs73112034 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73114293 | 1.00[AMR][1000 genomes] |
| rs73117528 | 1.00[AMR][1000 genomes] |
| rs73117565 | 1.00[AMR][1000 genomes] |
| rs73123173 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv8970 | chr12:40904094-40951213 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv3388339 | chr12:40917344-40931738 | Enhancers Weak transcription | TF binding regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
