Variant report
| Variant | rs17128339 |
|---|---|
| Chromosome Location | chr12:40894953-40894954 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11564105 | 1.00[AMR][1000 genomes] |
| rs11564112 | 1.00[AMR][1000 genomes] |
| rs11564134 | 1.00[AMR][1000 genomes] |
| rs11564174 | 1.00[AMR][1000 genomes] |
| rs11564254 | 1.00[AMR][1000 genomes] |
| rs11564257 | 1.00[AMR][1000 genomes] |
| rs11564261 | 1.00[AMR][1000 genomes] |
| rs17128169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3906865 | 1.00[AMR][1000 genomes] |
| rs61730701 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73094608 | 1.00[AMR][1000 genomes] |
| rs73094944 | 1.00[AMR][1000 genomes] |
| rs73094986 | 1.00[AMR][1000 genomes] |
| rs73097442 | 1.00[AMR][1000 genomes] |
| rs73097447 | 1.00[AMR][1000 genomes] |
| rs73097459 | 1.00[AMR][1000 genomes] |
| rs73097463 | 1.00[AMR][1000 genomes] |
| rs73097494 | 1.00[AMR][1000 genomes] |
| rs73101527 | 1.00[AMR][1000 genomes] |
| rs73107134 | 1.00[AMR][1000 genomes] |
| rs73107137 | 1.00[AMR][1000 genomes] |
| rs73112034 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73114293 | 1.00[AMR][1000 genomes] |
| rs73117528 | 1.00[AMR][1000 genomes] |
| rs73117565 | 1.00[AMR][1000 genomes] |
| rs73123173 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40894800-40908600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
