Variant report
| Variant | rs73108955 |
|---|---|
| Chromosome Location | chr12:41068907-41068908 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:41058052..41059920-chr12:41067347..41069015,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs58314047 | 1.00[EUR][1000 genomes] |
| rs73108906 | 1.00[EUR][1000 genomes] |
| rs73108951 | 1.00[EUR][1000 genomes] |
| rs73108972 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73108979 | 0.84[AFR][1000 genomes] |
| rs73108985 | 1.00[AFR][1000 genomes] |
| rs73109002 | 1.00[AFR][1000 genomes] |
| rs73110807 | 1.00[AFR][1000 genomes] |
| rs73110822 | 1.00[AFR][1000 genomes] |
| rs73110832 | 1.00[AFR][1000 genomes] |
| rs73110834 | 1.00[AFR][1000 genomes] |
| rs73110839 | 1.00[AFR][1000 genomes] |
| rs73110845 | 1.00[AFR][1000 genomes] |
| rs73110846 | 1.00[AFR][1000 genomes] |
| rs73110850 | 1.00[AFR][1000 genomes] |
| rs73110854 | 1.00[AFR][1000 genomes] |
| rs73110855 | 1.00[AFR][1000 genomes] |
| rs73110870 | 1.00[AFR][1000 genomes] |
| rs73110872 | 1.00[AFR][1000 genomes] |
| rs73110876 | 1.00[AFR][1000 genomes] |
| rs73110880 | 1.00[AFR][1000 genomes] |
| rs73123173 | 1.00[EUR][1000 genomes] |
| rs7962024 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv832378 | chr12:40943111-41132305 | Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv427909 | chr12:41054306-41322257 | Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv832379 | chr12:41054440-41232749 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3394680 | chr12:41068485-41070383 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41067000-41072600 | Weak transcription | Fetal Kidney | kidney |
