Variant report

Variant	rs73109119
Chromosome Location	chr4:26443154-26443155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26443090..26444766-chr4:27004196..27006740,2	MCF-7	breast:
2	chr4:26439053..26441508-chr4:26443087..26445412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11941651	1.00[AMR][1000 genomes]
rs4443266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57056140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73126668	1.00[AMR][1000 genomes]
rs73126670	1.00[AMR][1000 genomes]
rs73126674	1.00[AMR][1000 genomes]
rs73126675	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10467	chr4:26442264-26454782	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3464934	chr4:26442625-26454253	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3464936	chr4:26442630-26454272	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3464935	chr4:26442653-26454262	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3464937	chr4:26442766-26454169	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
4	chr4:26431800-26444400	Weak transcription	Gastric	stomach
5	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:26433800-26444200	Weak transcription	HepG2	liver
11	chr4:26434400-26443200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:26436200-26446000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:26436400-26445800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:26439200-26443200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:26439600-26444200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:26439800-26445400	Weak transcription	Fetal Thymus	thymus
18	chr4:26440200-26443400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:26440200-26444200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:26440200-26444400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:26440200-26444600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:26440200-26445200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:26440400-26443200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:26440400-26443400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:26440400-26444800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:26440600-26443400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:26440600-26443600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:26440600-26445800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr4:26440800-26443200	Weak transcription	Spleen	Spleen
30	chr4:26440800-26443600	Weak transcription	Fetal Intestine Small	intestine
31	chr4:26440800-26444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:26440800-26454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:26441200-26443400	Weak transcription	Brain Germinal Matrix	brain
34	chr4:26441200-26445000	Weak transcription	Fetal Brain Female	brain
35	chr4:26441400-26444400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:26441600-26444400	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:26441800-26444000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:26442200-26443600	Enhancers	Fetal Lung	lung
39	chr4:26442200-26443800	Enhancers	Colon Smooth Muscle	Colon
40	chr4:26442400-26443200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:26442400-26443400	Enhancers	Ovary	ovary
42	chr4:26442400-26443600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:26442400-26443800	Enhancers	Brain Hippocampus Middle	brain
44	chr4:26442600-26443200	Enhancers	Adipose Nuclei	Adipose
45	chr4:26442600-26443200	Enhancers	HSMM	muscle
46	chr4:26442600-26443400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:26442600-26443400	Genic enhancers	Muscle Satellite Cultured Cells	--
48	chr4:26442600-26443400	Enhancers	Brain Anterior Caudate	brain
49	chr4:26442600-26443400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr4:26442600-26443400	Enhancers	Brain Substantia Nigra	brain

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