Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914686	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915075	1.00[ASN][1000 genomes]
rs13068053	1.00[ASN][1000 genomes]
rs13324837	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454265	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729280	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35507461	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35868610	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56757842	1.00[ASN][1000 genomes]
rs58620671	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59020662	1.00[ASN][1000 genomes]
rs6768918	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790295	1.00[ASN][1000 genomes]
rs73118693	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73126649	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73138243	1.00[ASN][1000 genomes]
rs7645586	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813850	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853565	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864451	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv965384	chr3:82603863-82608331	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82605000-82607800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:82606600-82607800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:82606600-82608000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:82607200-82607600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:82607200-82607600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:82607200-82607600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:82607200-82607800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:82607200-82608000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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