Variant report
| Variant | rs9863575 |
|---|---|
| Chromosome Location | chr3:82619830-82619831 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11914686 | 1.00[ASN][1000 genomes] |
| rs11915075 | 1.00[ASN][1000 genomes] |
| rs13068053 | 1.00[ASN][1000 genomes] |
| rs13324837 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1454265 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28729280 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35507461 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35868610 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56757842 | 1.00[ASN][1000 genomes] |
| rs58620671 | 1.00[ASN][1000 genomes] |
| rs59020662 | 1.00[ASN][1000 genomes] |
| rs59605028 | 0.82[EUR][1000 genomes] |
| rs60241266 | 0.87[EUR][1000 genomes] |
| rs6768918 | 1.00[ASN][1000 genomes] |
| rs6790295 | 1.00[ASN][1000 genomes] |
| rs73115805 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73118693 | 1.00[ASN][1000 genomes] |
| rs73126649 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73138243 | 1.00[ASN][1000 genomes] |
| rs7645586 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9813850 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9853565 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9864451 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82616600-82624600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
