Variant report

Variant	rs73121386
Chromosome Location	chr7:38865235-38865236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1001476	1.00[EUR][1000 genomes]
rs10486680	0.98[EUR][1000 genomes]
rs11970960	0.96[EUR][1000 genomes]
rs11971030	1.00[EUR][1000 genomes]
rs11977016	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11978816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980534	1.00[EUR][1000 genomes]
rs11982889	1.00[EUR][1000 genomes]
rs11984145	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112141	1.00[EUR][1000 genomes]
rs1557941	1.00[EUR][1000 genomes]
rs16879964	1.00[EUR][1000 genomes]
rs16879966	0.96[EUR][1000 genomes]
rs17171465	1.00[EUR][1000 genomes]
rs17171466	1.00[EUR][1000 genomes]
rs28680843	0.96[EUR][1000 genomes]
rs34753378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60354841	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68175808	1.00[EUR][1000 genomes]
rs6962120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976100	1.00[EUR][1000 genomes]
rs713243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73113674	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73113680	1.00[EUR][1000 genomes]
rs73113689	1.00[EUR][1000 genomes]
rs73113699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115614	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115622	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115623	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115628	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73121378	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73121380	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73121381	1.00[EUR][1000 genomes]
rs73121384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73121396	0.96[EUR][1000 genomes]
rs73121399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73123603	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73123614	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73123618	0.96[EUR][1000 genomes]
rs73123621	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73123624	0.96[EUR][1000 genomes]
rs73123626	0.96[EUR][1000 genomes]
rs73123893	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73125633	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7812184	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38831000-38871200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:38831800-38867800	Weak transcription	Fetal Thymus	thymus
3	chr7:38835600-38900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:38839800-38871000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:38842000-38865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:38847400-38869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:38847800-38866800	Weak transcription	Brain Substantia Nigra	brain
8	chr7:38850200-38865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:38850600-38869600	Weak transcription	Stomach Mucosa	stomach
10	chr7:38851600-38867000	Weak transcription	Gastric	stomach
11	chr7:38854000-38870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:38855400-38865400	Weak transcription	Osteobl	bone
13	chr7:38855600-38871000	Weak transcription	HepG2	liver
14	chr7:38856000-38871000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:38856200-38865400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:38856200-38871200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:38856800-38865400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:38857200-38867200	Weak transcription	Esophagus	oesophagus
19	chr7:38857600-38865800	Weak transcription	HSMMtube	muscle
20	chr7:38857600-38871800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:38858000-38865600	Weak transcription	Liver	Liver
22	chr7:38858000-38870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:38858200-38867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:38858200-38868600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr7:38858400-38865400	Weak transcription	Left Ventricle	heart
26	chr7:38858400-38871800	Weak transcription	Lung	lung
27	chr7:38858600-38901600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:38858800-38907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:38859000-38865400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:38859000-38872800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:38859000-38895200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:38859200-38865400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:38859400-38865600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:38859400-38868000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:38859400-38869400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr7:38859800-38865400	Weak transcription	Pancreas	Pancrea
37	chr7:38859800-38900800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:38860000-38870800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:38860600-38900200	Weak transcription	Fetal Intestine Large	intestine
40	chr7:38860800-38865600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr7:38863000-38865400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:38863000-38865400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:38863000-38870800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:38863000-38876800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:38863000-38888200	Weak transcription	Fetal Intestine Small	intestine
46	chr7:38863200-38865600	Weak transcription	Primary B cells from cord blood	blood
47	chr7:38863800-38865600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr7:38863800-38865800	Weak transcription	Primary T cells from cord blood	blood
49	chr7:38863800-38869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:38863800-38879600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links