Variant report

Variant	rs73128433
Chromosome Location	chr1:224430083-224430084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224426515..224428404-chr1:224428419..224431301,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6660074	1.00[AMR][1000 genomes]
rs73128424	1.00[AMR][1000 genomes]
rs73128429	1.00[AMR][1000 genomes]
rs73128442	1.00[AMR][1000 genomes]
rs7514645	1.00[AMR][1000 genomes]
rs7541012	1.00[AMR][1000 genomes]
rs7553633	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873223	chr1:224367232-224467117	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224401800-224475400	Weak transcription	Esophagus	oesophagus
2	chr1:224407600-224434000	Weak transcription	Fetal Brain Male	brain
3	chr1:224411600-224438000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:224411600-224454400	Weak transcription	Psoas Muscle	Psoas
5	chr1:224412000-224433000	Weak transcription	Fetal Heart	heart
6	chr1:224412400-224473600	Weak transcription	HepG2	liver
7	chr1:224413200-224432600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:224414000-224432200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:224414200-224438000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:224415000-224436200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:224415000-224440000	Weak transcription	Fetal Kidney	kidney
12	chr1:224415600-224432600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:224415600-224435000	Weak transcription	Gastric	stomach
14	chr1:224415800-224435600	Weak transcription	NHLF	lung
15	chr1:224415800-224435800	Weak transcription	Brain Angular Gyrus	brain
16	chr1:224416000-224432800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:224416000-224436600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:224416000-224465600	Weak transcription	Small Intestine	intestine
19	chr1:224416200-224433000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:224417800-224435600	Weak transcription	Colonic Mucosa	Colon
21	chr1:224418000-224435400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:224418000-224436600	Weak transcription	Right Ventricle	heart
23	chr1:224418400-224439400	Weak transcription	HSMMtube	muscle
24	chr1:224419200-224432600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:224419200-224435600	Weak transcription	Brain Anterior Caudate	brain
26	chr1:224419200-224436600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:224420400-224435600	Weak transcription	HMEC	breast
28	chr1:224420800-224434400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:224421400-224433200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:224422800-224431000	Weak transcription	Hela-S3	cervix
31	chr1:224423000-224432000	Weak transcription	Primary B cells from cord blood	blood
32	chr1:224423600-224433000	Weak transcription	Lung	lung
33	chr1:224423800-224439400	Weak transcription	Right Atrium	heart
34	chr1:224424000-224435400	Weak transcription	Osteobl	bone
35	chr1:224424200-224432200	Weak transcription	Adipose Nuclei	Adipose
36	chr1:224424200-224432800	Weak transcription	A549	lung
37	chr1:224424200-224433000	Weak transcription	Left Ventricle	heart
38	chr1:224424200-224434200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr1:224424200-224435200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:224424200-224435400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:224424200-224435400	Weak transcription	NHEK	skin
42	chr1:224424200-224436000	Weak transcription	Fetal Lung	lung
43	chr1:224424400-224432600	Weak transcription	NH-A	brain
44	chr1:224424400-224433400	Weak transcription	Placenta	Placenta
45	chr1:224424400-224434800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:224424400-224435800	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:224424600-224432600	Weak transcription	HUVEC	blood vessel
48	chr1:224424600-224451600	Weak transcription	Aorta	Aorta
49	chr1:224424600-224479600	Weak transcription	Pancreas	Pancrea
50	chr1:224424800-224434200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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