Variant report

Variant	rs7514645
Chromosome Location	chr1:224411736-224411737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224406207..224408760-chr1:224411418..224413367,2	K562	blood:
2	chr1:224369856..224371888-chr1:224410575..224412569,2	K562	blood:
3	chr1:224410677..224413155-chr1:224413701..224415369,2	MCF-7	breast:
4	chr1:224410361..224412569-chr1:224413431..224415839,2	K562	blood:

Variant related genes	Relation type
ENSG00000143753	Chromatin interaction
ENSG00000237101	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10799556	1.00[MEX][hapmap]
rs11801211	1.00[MEX][hapmap]
rs11802182	1.00[MEX][hapmap]
rs16846212	1.00[MEX][hapmap]
rs16846293	1.00[MEX][hapmap]
rs16846339	1.00[MEX][hapmap]
rs2405305	1.00[ASW][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs6660074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73128409	1.00[AFR][1000 genomes]
rs73128424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73128429	1.00[AMR][1000 genomes]
rs73128433	1.00[AMR][1000 genomes]
rs73128442	1.00[AMR][1000 genomes]
rs7525250	1.00[MEX][hapmap]
rs7531588	1.00[MEX][hapmap]
rs7541012	1.00[AMR][1000 genomes]
rs7553633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873223	chr1:224367232-224467117	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224389600-224414400	Weak transcription	Fetal Brain Female	brain
2	chr1:224393800-224414200	Weak transcription	Colonic Mucosa	Colon
3	chr1:224394000-224414000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:224394000-224414600	Weak transcription	HMEC	breast
5	chr1:224398000-224414200	Weak transcription	Spleen	Spleen
6	chr1:224399400-224414200	Weak transcription	Adipose Nuclei	Adipose
7	chr1:224399400-224414200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:224401400-224413800	Weak transcription	Primary B cells from cord blood	blood
9	chr1:224401400-224413800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:224401400-224414800	Weak transcription	Right Ventricle	heart
11	chr1:224401600-224414400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:224401800-224415200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:224401800-224427600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:224401800-224475400	Weak transcription	Esophagus	oesophagus
15	chr1:224402200-224413800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:224402200-224414200	Weak transcription	GM12878-XiMat	blood
17	chr1:224406000-224414200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:224406200-224413800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:224406200-224414200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr1:224406200-224414200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr1:224406200-224414200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:224406200-224414200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:224406200-224414200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:224406200-224414200	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:224406200-224414400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:224406400-224414200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr1:224406800-224414400	Weak transcription	Pancreas	Pancrea
28	chr1:224407200-224413800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:224407200-224414400	Weak transcription	Placenta	Placenta
30	chr1:224407600-224411800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:224407600-224411800	Weak transcription	HepG2	liver
32	chr1:224407600-224414200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:224407600-224414200	Weak transcription	Fetal Thymus	thymus
34	chr1:224407600-224414200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:224407600-224434000	Weak transcription	Fetal Brain Male	brain
36	chr1:224407800-224414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:224407800-224414200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:224407800-224414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:224408000-224414200	Weak transcription	Gastric	stomach
40	chr1:224410000-224412200	Enhancers	Stomach Mucosa	stomach
41	chr1:224410400-224414200	Weak transcription	Liver	Liver
42	chr1:224411000-224411800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:224411000-224412000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr1:224411000-224412200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr1:224411000-224412200	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr1:224411000-224412200	Enhancers	NH-A	brain
47	chr1:224411000-224412400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:224411000-224412400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:224411000-224412400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
50	chr1:224411000-224412400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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