Variant report

Variant	rs73134505
Chromosome Location	chr7:77955781-77955782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17150532	1.00[ASN][1000 genomes]
rs17150548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619158	0.91[AMR][1000 genomes]
rs6948761	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134514	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73134519	1.00[ASN][1000 genomes]
rs73134536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134543	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134556	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134560	1.00[AMR][1000 genomes]
rs73136641	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73152071	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77951800-77955800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:77953600-77956200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:77953600-77957800	Weak transcription	Fetal Brain Male	brain
5	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:77954000-77956200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:77954800-77956600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:77955000-77956000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:77955000-77956600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:77955000-77956600	Enhancers	HSMMtube	muscle
11	chr7:77955000-77956800	Enhancers	HSMM	muscle
12	chr7:77955000-77957200	Enhancers	Placenta	Placenta
13	chr7:77955000-77957400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:77955200-77956200	Weak transcription	Ovary	ovary
15	chr7:77955200-77956200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:77955200-77956200	Weak transcription	Psoas Muscle	Psoas
17	chr7:77955200-77956200	Enhancers	NH-A	brain
18	chr7:77955200-77956600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:77955200-77963000	Weak transcription	Esophagus	oesophagus
20	chr7:77955400-77956000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:77955400-77956600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:77955400-77956800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:77955400-77956800	Enhancers	Osteobl	bone
24	chr7:77955400-77958800	Enhancers	Fetal Heart	heart
25	chr7:77955600-77958600	Enhancers	Cortex derived primary cultured neurospheres	brain

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