Variant report

Variant	rs73152071
Chromosome Location	chr7:77955106-77955107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17150532	1.00[ASN][1000 genomes]
rs17150548	0.91[AMR][1000 genomes]
rs59619158	0.82[AMR][1000 genomes]
rs6948761	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134505	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134514	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73134519	1.00[ASN][1000 genomes]
rs73134536	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134543	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134556	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73134560	0.91[AMR][1000 genomes]
rs73136641	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77951800-77955800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:77953000-77955400	Weak transcription	Osteobl	bone
4	chr7:77953600-77956200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:77953600-77957800	Weak transcription	Fetal Brain Male	brain
6	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:77954000-77956200	Weak transcription	Brain Angular Gyrus	brain
8	chr7:77954400-77955200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:77954800-77956600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:77955000-77955200	Enhancers	Esophagus	oesophagus
11	chr7:77955000-77955200	Enhancers	Ovary	ovary
12	chr7:77955000-77955200	Enhancers	Psoas Muscle	Psoas
13	chr7:77955000-77956000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:77955000-77956600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:77955000-77956600	Enhancers	HSMMtube	muscle
16	chr7:77955000-77956800	Enhancers	HSMM	muscle
17	chr7:77955000-77957200	Enhancers	Placenta	Placenta
18	chr7:77955000-77957400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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