Variant report

Variant	rs73134543
Chromosome Location	chr7:77963586-77963587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17150532	1.00[ASN][1000 genomes]
rs17150548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619158	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60689247	0.82[AFR][1000 genomes]
rs6948761	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134505	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134514	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73134519	1.00[ASN][1000 genomes]
rs73134536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134560	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73136641	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73152071	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:77956800-77964400	Weak transcription	Ovary	ovary
4	chr7:77957000-77975800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:77957200-77973200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:77957200-77975800	Weak transcription	Brain Substantia Nigra	brain
7	chr7:77957600-77974800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:77957600-77976000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:77957600-77978600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
11	chr7:77961400-77964200	Enhancers	Fetal Intestine Small	intestine
12	chr7:77962800-77964200	Enhancers	HepG2	liver
13	chr7:77963000-77963600	Enhancers	Liver	Liver
14	chr7:77963200-77964400	Weak transcription	Fetal Heart	heart
15	chr7:77963400-77964400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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