Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94597141..94599920-chr5:94605334..94608119,2	MCF-7	breast:
2	chr5:94303824..94305467-chr5:94596777..94598299,13	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10072344	1.00[EUR][1000 genomes]
rs17084595	1.00[EUR][1000 genomes]
rs17084604	1.00[EUR][1000 genomes]
rs17084611	1.00[EUR][1000 genomes]
rs56903600	1.00[EUR][1000 genomes]
rs57134395	1.00[EUR][1000 genomes]
rs57371920	1.00[EUR][1000 genomes]
rs59340203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60330559	1.00[EUR][1000 genomes]
rs60791043	1.00[EUR][1000 genomes]
rs6882948	1.00[EUR][1000 genomes]
rs73142031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142089	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150636	1.00[EUR][1000 genomes]
rs73150668	1.00[EUR][1000 genomes]
rs73150676	1.00[EUR][1000 genomes]
rs73776380	1.00[EUR][1000 genomes]
rs73776395	1.00[EUR][1000 genomes]
rs73776396	1.00[EUR][1000 genomes]
rs7727956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94596800-94598400	Enhancers	Primary hematopoietic stem cells	blood
2	chr5:94596800-94599000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:94596800-94599200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:94596800-94599600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:94597000-94598200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:94597000-94599400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94597400-94598200	Enhancers	HepG2	liver
8	chr5:94597600-94598600	Weak transcription	HUVEC	blood vessel
9	chr5:94597600-94599000	Enhancers	Liver	Liver
10	chr5:94597800-94599400	Enhancers	Fetal Intestine Large	intestine
11	chr5:94598000-94598200	Enhancers	Fetal Intestine Small	intestine
12	chr5:94598000-94598400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:94598000-94599000	Enhancers	Stomach Mucosa	stomach

Quick Search: