Variant report

Variant	rs73149204
Chromosome Location	chr4:54134158-54134159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17082480	1.00[AMR][1000 genomes]
rs56813620	1.00[AMR][1000 genomes]
rs57511626	1.00[AMR][1000 genomes]
rs59214826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60129843	1.00[AMR][1000 genomes]
rs60233651	1.00[AMR][1000 genomes]
rs60576071	1.00[AMR][1000 genomes]
rs6849924	1.00[AMR][1000 genomes]
rs73143452	1.00[AMR][1000 genomes]
rs73143453	1.00[AMR][1000 genomes]
rs73143457	1.00[AMR][1000 genomes]
rs73143465	1.00[AMR][1000 genomes]
rs73143467	1.00[AMR][1000 genomes]
rs73143475	1.00[AMR][1000 genomes]
rs73143476	1.00[AMR][1000 genomes]
rs73143480	1.00[AMR][1000 genomes]
rs73143483	1.00[AMR][1000 genomes]
rs73143487	1.00[AMR][1000 genomes]
rs73143488	1.00[AMR][1000 genomes]
rs73143491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143494	1.00[AMR][1000 genomes]
rs73143496	1.00[AMR][1000 genomes]
rs73147392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677921	1.00[AMR][1000 genomes]
rs7684049	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2763360	chr4:54123894-54153814	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54114400-54134400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:54114400-54139600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54114400-54144000	Weak transcription	Liver	Liver
4	chr4:54122200-54139800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:54126600-54134200	Weak transcription	Gastric	stomach
6	chr4:54126800-54141400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:54127600-54153000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:54128000-54134400	Weak transcription	Pancreas	Pancrea
9	chr4:54128200-54136200	Weak transcription	Thymus	Thymus
10	chr4:54129600-54141400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:54129600-54154600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:54129800-54145200	Weak transcription	Fetal Lung	lung
13	chr4:54130000-54134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:54130000-54135800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:54130200-54134400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:54130400-54134200	Weak transcription	Spleen	Spleen
17	chr4:54130400-54134400	Weak transcription	Primary T cells from cord blood	blood
18	chr4:54130400-54143400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:54130400-54148600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:54130400-54150400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:54130600-54134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:54130600-54134200	Weak transcription	Fetal Stomach	stomach
23	chr4:54130600-54134400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:54130600-54134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:54130600-54135000	Weak transcription	Fetal Intestine Large	intestine
26	chr4:54130600-54136000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:54130600-54137200	Weak transcription	Esophagus	oesophagus
28	chr4:54130600-54148200	Weak transcription	Fetal Intestine Small	intestine
29	chr4:54130800-54134200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:54130800-54134200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:54130800-54134200	Weak transcription	NHLF	lung
32	chr4:54130800-54134600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:54130800-54134800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:54131000-54145800	Weak transcription	Primary B cells from cord blood	blood
35	chr4:54132400-54135800	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:54132600-54134200	Weak transcription	Left Ventricle	heart
37	chr4:54132600-54134200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:54133000-54141400	Weak transcription	Placenta	Placenta
39	chr4:54133200-54144600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:54133400-54134800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:54133600-54135600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr4:54133600-54139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:54133800-54134800	Strong transcription	NHDF-Ad	bronchial
44	chr4:54133800-54135400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:54133800-54139600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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