The 2.0 version of rSNPBase

Variant report

Variant rs7677921
Chromosome Location chr4:54053413-54053414
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54038800-54054800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr4:54043200-54077000 Weak transcription Primary T cells from cord blood blood
3 chr4:54048000-54086000 Weak transcription GM12878-XiMat blood
4 chr4:54049800-54053600 Weak transcription NHLF lung
5 chr4:54050200-54061800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr4:54050400-54062400 Weak transcription Primary hematopoietic stem cells blood
7 chr4:54050800-54053600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
8 chr4:54051000-54073000 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr4:54052000-54054200 Enhancers Liver Liver
10 chr4:54052000-54054400 Enhancers Fetal Kidney kidney
11 chr4:54052000-54054400 Enhancers Osteobl bone
12 chr4:54052000-54055400 Enhancers Fetal Intestine Large intestine
13 chr4:54052000-54055800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr4:54052000-54056600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr4:54052200-54054400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr4:54052200-54054400 Enhancers Muscle Satellite Cultured Cells --
17 chr4:54052200-54054400 Enhancers Pancreatic Islets Pancreatic Islet
18 chr4:54052200-54054600 Enhancers K562 blood
19 chr4:54052200-54055800 Enhancers HepG2 liver
20 chr4:54052200-54056600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr4:54052200-54056600 Enhancers NHDF-Ad bronchial
22 chr4:54052400-54053600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr4:54052400-54054400 Weak transcription Ovary ovary
24 chr4:54052400-54056000 Enhancers NH-A brain
25 chr4:54052400-54065800 Weak transcription Aorta Aorta
26 chr4:54052600-54054200 Weak transcription Fetal Intestine Small intestine
27 chr4:54052800-54053600 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr4:54052800-54054200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr4:54052800-54054400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr4:54052800-54054400 Weak transcription Fetal Stomach stomach
31 chr4:54052800-54056600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr4:54053000-54053800 Weak transcription HSMM muscle
33 chr4:54053000-54054000 Weak transcription HSMMtube muscle
34 chr4:54053000-54054400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr4:54053000-54093000 Weak transcription Primary B cells from cord blood blood
36 chr4:54053200-54054200 Weak transcription Brain Substantia Nigra brain
37 chr4:54053200-54058000 Weak transcription Small Intestine intestine
38 chr4:54053400-54053800 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015