Variant report
| Variant | rs73151235 |
|---|---|
| Chromosome Location | chr4:56107408-56107409 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KDR-7 | chr4:56107407-56107633 | expReg_chr4_2677_- |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11934751 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6554267 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6837433 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6843876 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7656564 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7659097 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7665565 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7688561 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7690906 | 0.84[AMR][1000 genomes] |
| rs7696300 | 0.95[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
