Variant report

Variant	rs6837433
Chromosome Location	chr4:56121149-56121150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11934751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6554267	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843876	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848437	0.80[AFR][1000 genomes]
rs73151235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664999	0.85[AFR][1000 genomes]
rs7665565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673410	0.92[AFR][1000 genomes]
rs7688561	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690906	0.84[AMR][1000 genomes]
rs7696300	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56117800-56122800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:56118000-56122600	Weak transcription	Right Atrium	heart
3	chr4:56119400-56123400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:56119800-56121400	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:56119800-56121400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:56119800-56122200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:56120000-56121400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:56120000-56121400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:56120000-56123600	Enhancers	Fetal Heart	heart
10	chr4:56120400-56125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:56120600-56122600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:56120600-56122600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:56120600-56122800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:56120600-56122800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:56120600-56122800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:56120600-56122800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:56120600-56123200	Weak transcription	HUVEC	blood vessel
18	chr4:56120800-56121200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:56121000-56121400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:56121000-56122800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:56121000-56123400	Enhancers	Placenta Amnion	Placenta Amnion

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