Variant report

Variant	rs11934751
Chromosome Location	chr4:56124505-56124506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6554267	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843876	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848437	0.80[AFR][1000 genomes]
rs73151235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664999	0.85[AFR][1000 genomes]
rs7665565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673410	0.92[AFR][1000 genomes]
rs7688561	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690906	0.84[AMR][1000 genomes]
rs7696300	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56120400-56125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:56122800-56125000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56123000-56126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:56123200-56124800	Weak transcription	Right Atrium	heart
5	chr4:56123400-56124600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:56123400-56124800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:56123400-56126800	Weak transcription	Left Ventricle	heart
8	chr4:56123800-56125200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:56123800-56125600	Enhancers	HUVEC	blood vessel
10	chr4:56124000-56124600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:56124000-56124600	Enhancers	Fetal Heart	heart
12	chr4:56124000-56125000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:56124000-56125600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:56124400-56126200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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