Variant report
| Variant | rs7664999 |
|---|---|
| Chromosome Location | chr4:56091629-56091630 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10034873 | 1.00[EUR][1000 genomes] |
| rs10212910 | 1.00[EUR][1000 genomes] |
| rs11934751 | 0.85[AFR][1000 genomes] |
| rs11936413 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17085320 | 1.00[EUR][1000 genomes] |
| rs17085340 | 1.00[EUR][1000 genomes] |
| rs17085382 | 1.00[EUR][1000 genomes] |
| rs17085431 | 1.00[EUR][1000 genomes] |
| rs28431274 | 1.00[EUR][1000 genomes] |
| rs28534637 | 1.00[EUR][1000 genomes] |
| rs28585443 | 1.00[EUR][1000 genomes] |
| rs28664865 | 1.00[EUR][1000 genomes] |
| rs41520946 | 1.00[EUR][1000 genomes] |
| rs58047235 | 1.00[EUR][1000 genomes] |
| rs6554272 | 1.00[EUR][1000 genomes] |
| rs6830995 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6835587 | 1.00[EUR][1000 genomes] |
| rs6836091 | 1.00[EUR][1000 genomes] |
| rs6836729 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6837433 | 0.85[AFR][1000 genomes] |
| rs6839741 | 1.00[EUR][1000 genomes] |
| rs6843015 | 1.00[EUR][1000 genomes] |
| rs6848437 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73149762 | 1.00[EUR][1000 genomes] |
| rs7656132 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7673410 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7683735 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7693155 | 1.00[EUR][1000 genomes] |
| rs9312659 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:56091200-56092000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
