Variant report

Variant	rs28431274
Chromosome Location	chr4:56054538-56054539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10034873	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10212910	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11936413	1.00[EUR][1000 genomes]
rs17085320	1.00[EUR][1000 genomes]
rs17085340	1.00[EUR][1000 genomes]
rs17085382	1.00[EUR][1000 genomes]
rs17085431	1.00[EUR][1000 genomes]
rs28534637	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28579065	1.00[EUR][1000 genomes]
rs28585443	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28664865	1.00[EUR][1000 genomes]
rs28730308	1.00[EUR][1000 genomes]
rs41520946	1.00[EUR][1000 genomes]
rs57190330	1.00[EUR][1000 genomes]
rs58047235	1.00[EUR][1000 genomes]
rs6554272	1.00[EUR][1000 genomes]
rs6830995	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6835587	1.00[EUR][1000 genomes]
rs6836091	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6836729	1.00[EUR][1000 genomes]
rs6839741	1.00[EUR][1000 genomes]
rs6843015	1.00[EUR][1000 genomes]
rs6848437	1.00[EUR][1000 genomes]
rs73149762	1.00[EUR][1000 genomes]
rs7656132	1.00[EUR][1000 genomes]
rs7664999	1.00[EUR][1000 genomes]
rs7673410	1.00[EUR][1000 genomes]
rs7683735	1.00[EUR][1000 genomes]
rs7693155	1.00[EUR][1000 genomes]
rs9312659	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56050200-56054600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:56050200-56054600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr4:56051000-56054600	Weak transcription	Lung	lung
4	chr4:56051200-56054800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:56052000-56054600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:56053400-56054600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:56053600-56055000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:56054000-56055000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:56054400-56054600	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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