Variant report
| Variant | rs6839741 |
|---|---|
| Chromosome Location | chr4:56204123-56204124 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128039 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10031586 | 1.00[EUR][1000 genomes] |
| rs10034873 | 1.00[EUR][1000 genomes] |
| rs10212910 | 1.00[EUR][1000 genomes] |
| rs11936413 | 1.00[EUR][1000 genomes] |
| rs1533803 | 1.00[EUR][1000 genomes] |
| rs1554482 | 1.00[EUR][1000 genomes] |
| rs17085431 | 1.00[EUR][1000 genomes] |
| rs17085739 | 1.00[EUR][1000 genomes] |
| rs17085769 | 1.00[EUR][1000 genomes] |
| rs17085780 | 1.00[EUR][1000 genomes] |
| rs17085821 | 1.00[EUR][1000 genomes] |
| rs2140076 | 1.00[EUR][1000 genomes] |
| rs28431274 | 1.00[EUR][1000 genomes] |
| rs28534637 | 1.00[EUR][1000 genomes] |
| rs28585443 | 1.00[EUR][1000 genomes] |
| rs28664865 | 1.00[EUR][1000 genomes] |
| rs35150421 | 1.00[EUR][1000 genomes] |
| rs57848550 | 1.00[EUR][1000 genomes] |
| rs58047235 | 1.00[EUR][1000 genomes] |
| rs58395965 | 1.00[EUR][1000 genomes] |
| rs6554272 | 1.00[EUR][1000 genomes] |
| rs6820823 | 1.00[EUR][1000 genomes] |
| rs6830995 | 1.00[EUR][1000 genomes] |
| rs6836091 | 1.00[EUR][1000 genomes] |
| rs6836729 | 1.00[EUR][1000 genomes] |
| rs6848437 | 1.00[EUR][1000 genomes] |
| rs6855837 | 1.00[EUR][1000 genomes] |
| rs73149762 | 1.00[EUR][1000 genomes] |
| rs73151873 | 1.00[EUR][1000 genomes] |
| rs73151889 | 1.00[EUR][1000 genomes] |
| rs73153687 | 1.00[EUR][1000 genomes] |
| rs73819624 | 1.00[EUR][1000 genomes] |
| rs73819626 | 1.00[EUR][1000 genomes] |
| rs73819631 | 1.00[EUR][1000 genomes] |
| rs7656132 | 1.00[EUR][1000 genomes] |
| rs7664999 | 1.00[EUR][1000 genomes] |
| rs7673410 | 1.00[EUR][1000 genomes] |
| rs7683735 | 1.00[EUR][1000 genomes] |
| rs9312659 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | esv3328582 | chr4:56164136-56486156 | Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:56203000-56204200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 2 | chr4:56203600-56210400 | Weak transcription | Primary hematopoietic stem cells | blood |
| 3 | chr4:56203800-56206400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
