Variant report

Variant	rs17085320
Chromosome Location	chr4:55976350-55976351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10034873	1.00[EUR][1000 genomes]
rs10212910	1.00[EUR][1000 genomes]
rs11936413	1.00[EUR][1000 genomes]
rs17085340	1.00[EUR][1000 genomes]
rs17085382	1.00[EUR][1000 genomes]
rs17085431	1.00[EUR][1000 genomes]
rs28431274	1.00[EUR][1000 genomes]
rs28534637	1.00[EUR][1000 genomes]
rs28579065	1.00[EUR][1000 genomes]
rs28585443	1.00[EUR][1000 genomes]
rs28664865	1.00[EUR][1000 genomes]
rs28730308	1.00[EUR][1000 genomes]
rs41520946	1.00[EUR][1000 genomes]
rs57190330	1.00[EUR][1000 genomes]
rs58047235	1.00[EUR][1000 genomes]
rs6830995	1.00[EUR][1000 genomes]
rs6835587	1.00[EUR][1000 genomes]
rs6836091	1.00[EUR][1000 genomes]
rs6843015	1.00[EUR][1000 genomes]
rs6848437	1.00[EUR][1000 genomes]
rs7656132	1.00[EUR][1000 genomes]
rs7664999	1.00[EUR][1000 genomes]
rs7673410	1.00[EUR][1000 genomes]
rs7683735	1.00[EUR][1000 genomes]
rs7693155	1.00[EUR][1000 genomes]
rs9312659	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55943200-55990000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:55946800-55982800	Strong transcription	H1 Cell Line	embryonic stem cell
3	chr4:55947200-55982600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:55948000-55984800	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr4:55953600-55983000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:55954000-55983000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:55954000-55989000	Weak transcription	Right Ventricle	heart
8	chr4:55954200-55982800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:55954200-55982800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:55954400-55982600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:55954400-55983000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:55954400-55990400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:55957800-55978200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:55958800-55987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:55961000-55983200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:55961000-55990000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:55966200-55982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:55967800-55981800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:55971000-55990000	Weak transcription	Gastric	stomach
20	chr4:55972000-55990800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:55972200-55990000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:55973800-55979000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:55974000-55979400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:55974000-55988600	Weak transcription	Left Ventricle	heart
25	chr4:55974200-55982400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:55975400-55976400	Strong transcription	HUVEC	blood vessel
27	chr4:55975600-55976400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:55976000-55976400	Strong transcription	Lung	lung
29	chr4:55976000-55976600	Strong transcription	Adipose Nuclei	Adipose
30	chr4:55976000-55977200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:55976200-55976800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links